BORON-BASED AND ORGANOMETALLIC LUMINESCENT SCAFFOLDS FOR NUCLEIC ACID RECOGNITION AND PH PROBING

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Novoseltseva, Polina

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thesis

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eng

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Luminescence , pH probe , BF2 beta-diketonates , Platinum(II) , Guanine quadruplex

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Abstract

In this thesis, luminescence is imparted to molecules designed to perform pH sensing, drug delivery and guanine quadruplex binding. For pH sensing and drug delivery, luminescent pH-responsive molecular scaffolds were developed on the basis of BF2 ß-diketonates, some of which exhibit a conformational switch upon H+ binding. For the purposes of guanine quadruplex binding, a phosphorescent Pt(II) complex with N^C^N ligand core was constructed. Each with a unique design, the two molecule families are linked by a common end-goal: to visualize key biological processes upon future implementation in vivo. Chapter 2 is centered around a family of new aromatic BF2 ß-diketonates and their properties in the context of pH sensing and drug delivery applications. First, the synthesis, purification, and characterization each BF2 ß-diketonate are described at length. Next, the pH-responsive nature of pyridine-containing BF2 ß-diketonates and their conformational switching ability upon H+ binding are established by 1H NMR and 1D NOESY spectroscopies following incremental acid addition. The changes observed in absorption and emission of BF2 ß-diketonates upon H+ binding in acetonitrile are also described and rationalized with the help of TD-DFT computation. Finally, the stability of some of the synthesized BF2 ß-diketonates is modeled by assessing their emission in aqueous environments of varying pH (DI water, pH 2 PBS, pH 5 PBS, pH 8 PBS) over extended periods of time. The obtained results are discussed in the context of their pH sensing and drug delivery potential. In Chapter 3, the unique features of a new Pt(II)-based intrinsically luminescent guanine quadruplex binder, a Pt-dqb(Cl) complex, are described in detail (dqb = 4-methylamine-2,6-di(2- quinolyl)benzene). To achieve the synthesis of this complex, four synthesis routes (Route 1 to 4) are proposed, and Routes 1 and 2 explored. Of the two, synthesis via Route 2 was found to be more promising, giving the oxime-protected dqb ligand at an overall yield of 16%. To circumvent the moisture sensitivity of the coupling reaction employed in Route 2, alternative Routes 3 and 4 are proposed for future synthesis attempts.

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